The PONDR® output consists of up to three parts, depending on what is chosen by the user on the input form:
A graphical representation of the PONDR® output
A textual output using "D" to show disorder along the sequence
A raw score for each predictor for each amino acid in the protein
This is the textual output from the VL-XT prediction upon RluC. The links popup a small window with a description of that particular item. (Of course, the actual output will not have these links.)
PONDR® Protein Disorder Predictor
Developed by P. Romero, X. Li, A.K. Dunker, Z. Obradovic, E. Garner.
================================VLXT NNP STATISTICS================================
Predicted residues: 319 Number Disordered Regions: 6
Number residues disordered: 140 Longest Disordered Region: 54
Overall percent disordered: 43.89 Average Prediction Score: 0.4562
Predicted disorder segment [1]-[10] Average Strength= 0.7624
Predicted disorder segment [34]-[87] Average Strength= 0.8731
Predicted disorder segment [147]-[172] Average Strength= 0.7688
Predicted disorder segment [189]-[192] Average Strength= 0.5484
Predicted disorder segment [203]-[222] Average Strength= 0.7444
Predicted disorder segment [294]-[319] Average Strength= 0.7356
================================PREDICTOR OUTPUT================================
"D" = Disordered " " = Ordered
================================================================================
1 MKTETPSVKI VAITADEAGQ RIDNFLRTQL KGVPKSMIYR ILRKGEVRVN
VLXT DDDDDDDDDD DDDDDDD DDDDDDDDDD
51 KKRIKPEYKL EAGDEVRIPP VRVAEREEEA VSPHLQKVAA LADVILYEDD
VLXT DDDDDDDDDD DDDDDDDDDD DDDDDDDDDD DDDDDDD
101 HILVLNKPSG TAVHGGSGLS FGVIEGLRAL RPEARFLELV HRLDRDTSGV
VLXT DDDD
151 LLVAKKRSAL RSLHEQLREK GMQKDYLALV RGQWQSHVKS VQAPLLKNIL
VLXT DDDDDDDDDD DDDDDDDDDD DD DD DD
201 QSGERIVRVS QEGKPSETRF KVEERYAFAT LVRCSPVTGR THQIRVHTQY
VLXT DDDDDDDD DDDDDDDDDD DD
251 AGHPIAFDDR YGDREFDRQL TEAGTGLNRL FLHAAALKFT HPGTGEVMRI
VLXT DDDDDDD
301 EAPMDEGLKR CLQKLRNAR
VLXT DDDDDDDDDD DDDDDDDDD
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Copyright © 2002, 2003 Molecular Kinetics, Inc., all rights reserved.
Access to PONDR® is provided by Molecular Kinetics (6201 La Pas Trail - Ste 160, Indianapolis, IN 46268;
www.molecularkinetics.com;
main@molecularkinetics.com) under license from the WSU Research Foundation.
PONDR® is copyright ©1999 by the WSU Research Foundation, all rights reserved.
Molecular Kinetics, Inc., Washington State University and the WSU Research Foundation and their several employees and consultants assume no liability, either real or implied, from the use of PONDR® in any of its forms or the results of its predictions for any damage, loss of time, loss of profit, either real or potential, or any other damage or loss that may arise from the use of PONDR® in any of its forms or from the results of its predictions. Last updated: Jan. 12, 2007.
